YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56679979, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.64
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDNPEPARIV RLMEHRADIA IVGGGLNGPA LALALAQSGQ SVVLVDALPD PLRTDAEFDG  60
   61 RAYALALASQ RLLAAVGVWD HVAEAAQPML EIKVSDGHAG AGPSPFFLHF DHAEIEEGPM 120
  121 GYMVEDRYLR RALLAAMEDA PRITRLNGAA VTAQQTDGTG VVLTLADGSH LRAGLVVGCD 180
  181 GRKSGTATRA GIKRTGWDYG QTALVCAIAH ERPHHGIAHQ FFMPPGPLAI LPLPGNRSSI 240
  241 VWSERTEAAA RINALPEAEY LEILRPRFGD FLGEIRLEGA RFTYPLNLTV ANAFVAERLA 300
  301 LVGDAAHGMH PIAGQGLNAG LRDVGALAEV LILAARRGED IGAAPVLERY QQWRRFDTAT 360
  361 LALATDAFNR LFSNDNPLLR LGRDVGMGVI GAFPGLRRGF VREATGLTGD LPKLMQGRAI 420
  421

Type	Start	End	Confidence
Cytoplasmic	1	16	0.60
Transmembrane Helix	17	36	0.57
Non-Cytoplasmic	37	420	0.97