YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56698202, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	9	0.75
Transmembrane Helix	10	32	0.88
Non-Cytoplasmic	33	38	0.70
Transmembrane Helix	39	63	0.84
Cytoplasmic	64	67	0.64
Transmembrane Helix	68	85	0.69
Non-Cytoplasmic	86	89	0.68
Transmembrane Helix	90	110	0.91
Cytoplasmic	111	116	0.71
Transmembrane Helix	117	138	0.86
Non-Cytoplasmic	139	142	0.66
Transmembrane Helix	143	161	0.85
Cytoplasmic	162	167	0.67
Transmembrane Helix	168	191	0.83
Non-Cytoplasmic	192	209	0.64
Transmembrane Helix	210	234	0.71
Cytoplasmic	235	245	0.67
Transmembrane Helix	246	272	0.81
Non-Cytoplasmic	273	288	0.73
Transmembrane Helix	289	311	0.88
Cytoplasmic	312	317	0.61
Transmembrane Helix	318	340	0.90
Non-Cytoplasmic	341	349	0.76
Transmembrane Helix	350	378	0.82
Cytoplasmic	379	390	0.75

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTVRPPLQTV STGLVVAIVG FFGSFPIVLQ GLTGVGADAA QAASGLMFAA LSMGISGILL  60
   61 SLWTKAPVSV AWSTPGAALL AVSTLPQDGF GGAVAGFIMA GALTVIAAWW RPLSRLTAAI 120
  121 PGPIAQAMLA GVLFALCLRP FQALAEIPLL ALPILLTWFI ASQISRPFAV PAAVIAGALV 180
  181 VTVNAGFDIP APEAIFAAPV WVTPVFSLEA LTNIALPLFI VTMATQNVPG LAVLRAYGYQ 240
  241 PRPAPLVAGV GAASVLSAPF GSPATCLAAI TAAMCANEES HPDPTQRYWS AVMGGLFYCL 300
  301 LGLFAGVITG FAALAPALVL GTVAGVALLG VFAGSALAAL EDPDCRQAAA VTFLITASGV 360
  361 TILGLSAAVW GLVIGGLMQM ISSRIRRART