YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56698159, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.95
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGRKTGNRTL MRKFLISASL VLGLWPQFLL AQSLQVTTVT RPPFSFVEDG VETGFSMDLL  60
   61 AALADKLGLG YTLERKEKFS DMLAAVMDGE ADMAIANISI TAARETEMDF SQPIFESGLQ 120
  121 ILVPAETNAG SSLLRALLSR DLFLAIGAAF VILLTGGMLM WYFERRAQPY FDRKLHEAWF 180
  181 PSFWWALNLV VNGGFEERVP RTAFGRLFGV LLVISSLFVV SVFTARITSV MTVEAISGSV 240
  241 NSVNDLYGQE VGTIDGSTAA GFLTRRDIDF AAFSDLQEMI TAFERGALDA IVFDAPILSY 300
  301 YASHQGKGKA VTTGAIFLRE NYGIAFPTGS ARVEEVNQAL LALREDGTYE ELYRKWFGRR 360
  361 N

Type	Start	End	Confidence
Signal Peptide	1	31	0.95
N-region	1	22
H-region	23	28
C-region	29	31
Cleavage Site	31	32
Non-Cytoplasmic	32	141	0.98
Transmembrane Helix	142	163	0.96
Cytoplasmic	164	177	0.89
Transmembrane Helix	178	195	0.59
Non-Cytoplasmic	196	202	0.53
Transmembrane Helix	203	227	0.84
Cytoplasmic	228	361	0.63