YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56679813, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.56
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQDLRTDRVV IIGAGLAAIY AALKLAPHPV LMISPDPLGH GASSAWAQGG VAAAMDPADT  60
   61 PEAHARDTLR AGAGTVLQEV ADYVTRAARA HILDLTDLGT AFDRTRDGGY VMSREAAHSA 120
  121 ARVVRVKGDQ AGAEIMRALI AELRQTRSVQ VLEGAQVTRL LVEAGRVSGV CLTSAAPEGS 180
  181 APVTLRAPAV LLAAGGAAGL YAQTTNPARI RGQALGMAAR AGARIADGEF VQFHPTAIAT 240
  241 GADPAPLATE ALRGEGAILI DRHGQRFMPA LHPDAELAPR DVVARAVYLQ TQAGNAPALD 300
  301 TRAAIGAHLP TLFPAVAQAC AEAGIDPLSA PIPVAAAAHY HMGGVAADLD GKCSLPGLWV 360
  361 CGEAASTGLH GANRLASNGL LEALVFARAC ARDIARQVRQ TVAARVDISF APGGDAPDAQ 420
  421 TVAELRRIMT DHVGVVRDVD GLRRALRAIA QIEGAHPPCD ALANMTATAT MIAAAALMRQ 480
  481 ESRGAHYRTD FPQAAPGPGQ RSDLTLEQAL TLRNTL

Type	Start	End	Confidence
Cytoplasmic	1	8	0.51
Transmembrane Helix	9	26	0.51
Non-Cytoplasmic	27	516	0.95