YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56698068, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASEAQAADK AAEGGSLVFH PMDQFIVKPL FGDGAVGMFT ITNSTLWMGL AVLAIIGLLV  60
   61 LSTSKRAIVP GRMQSIAELA YGFIYKMVED ICGKDGVKYF PYVMTLFMFI VTANFLGLLP 120
  121 KSFTTTSHFA VTMVLALAVF LTVTILGFVK NGAGFLSLFW VASAPLALRP ILAIIELISY 180
  181 FVRPVSHSIR LAGNVMAGHA VIKVFAGFAA IAAISPVSVL AITAMYGLEV LVAFIQAYVF 240
  241 TILTCVYLKD ALHPHH

Type	Start	End	Confidence
Cytoplasmic	1	38	0.51
Transmembrane Helix	39	63	0.81
Non-Cytoplasmic	64	98	0.55
Transmembrane Helix	99	119	0.87
Cytoplasmic	120	127	0.67
Transmembrane Helix	128	149	0.92
Non-Cytoplasmic	150	157	0.66
Transmembrane Helix	158	182	0.81
Cytoplasmic	183	199	0.69
Transmembrane Helix	200	224	0.83
Non-Cytoplasmic	225	229	0.53
Transmembrane Helix	230	248	0.88
Cytoplasmic	249	256	0.68