YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56679755, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	27	0.89
Transmembrane Helix	28	45	0.92
Non-Cytoplasmic	46	65	0.83
Transmembrane Helix	66	85	0.97
Cytoplasmic	86	104	0.91
Transmembrane Helix	105	126	0.93
Non-Cytoplasmic	127	162	0.94
Transmembrane Helix	163	183	0.94
Cytoplasmic	184	203	0.82
Transmembrane Helix	204	229	0.83
Non-Cytoplasmic	230	254	0.76
Transmembrane Helix	255	280	0.85
Cytoplasmic	281	291	0.69
Transmembrane Helix	292	316	0.85
Non-Cytoplasmic	317	408	0.92
Transmembrane Helix	409	428	0.93
Cytoplasmic	429	436	0.88
Transmembrane Helix	437	461	0.86
Non-Cytoplasmic	462	492	0.93
Transmembrane Helix	493	517	0.87
Cytoplasmic	518	537	0.83
Transmembrane Helix	538	555	0.96
Non-Cytoplasmic	556	569	0.81
Transmembrane Helix	570	593	0.89
Cytoplasmic	594	611	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSIKPPFTDI EVKRAASGFY QGHSVEIALF SKAIMVGLVL WALVWPANAN GVLGSLNWRL  60
   61 LEDFNVFYIV IVGFFAVFLF VLAALPQTGK RIMGRPGEGT EFSNFSWFSM MFGAGLGVGL 120
  121 MVFATAEPLG LWGSNPVVVS GAVQGNTEEA LQSAYRYTFA HYGFHAWAIY VVTGLALAYY 180
  181 AYTRDMPLTI RSALTPLFGS LMNGFLGHVV DVLGVLATIL GVSVTIGFGV SQFIDGMYAI 240
  241 TGMEWMMDMT GEAPAPGTVG LIAGLVVIMG LSIVSAVSGV GRGVKYLSNL NLVLSLILLF 300
  301 TFVLFGSFLF AMTTYASALV DYLLNFLSIS FGAYGPQDPA AFVAALPAEA APYADALRGG 360
  361 ATNAWGSFEG FKSGLEGEAA ALSDEVLAAA YAAGEPGRQF GWQAGWTTFY WAWWIAFSPF 420
  421 VGLFLARISR GRTVREFIIG CLFAPALVCF AWMTILGGTA IDLELTGDAN GAIIGASNTA 480
  481 KLFVTLGQML SGGFLSAITI MCVVLIMTFL VTSADSGILV MNTIMSGGDQ NVGNKHKIVW 540
  541 GVILTAVIGT LLIAGKTNGG ADPMEALKSA MIIGALPFTA VMGLMCVSLA KALYRDGKRE 600
  601 KLGLAVGDPA E