YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56679700, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTPQFRALLV HLFTATGAVF AMLAMLAAVD AKWDLMFLWL VVAFFVDGLD GPMARRYHVK  60
   61 TYAPEFDGVL LDLIIDYLTY VFIPAFALFK SGLMDGWTGW LAIIIITFAS AMYFADTRMK 120
  121 TKDNSFSGFP GCWNMVVLVI FALEPNFWVS LVLVTVLAVS MFLPLKFVHP VRTERWRAIT 180
  181 LPMALAWTFF AGWAAWVGFH PESWAHWGLV VTSLYLIFAG IAQMVIPEKD TASPF

Type	Start	End	Confidence
Cytoplasmic	1	7	0.92
Transmembrane Helix	8	29	0.94
Non-Cytoplasmic	30	34	0.90
Transmembrane Helix	35	54	0.89
Cytoplasmic	55	67	0.83
Transmembrane Helix	68	89	0.88
Non-Cytoplasmic	90	95	0.88
Transmembrane Helix	96	115	0.95
Cytoplasmic	116	124	0.84
Transmembrane Helix	125	143	0.94
Non-Cytoplasmic	144	147	0.85
Transmembrane Helix	148	168	0.93
Cytoplasmic	169	177	0.85
Transmembrane Helix	178	197	0.96
Non-Cytoplasmic	198	203	0.84
Transmembrane Helix	204	226	0.92
Cytoplasmic	227	235	0.96