YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	COXX_RUEPO
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	32	0.91
Transmembrane Helix	33	52	0.87
Non-Cytoplasmic	53	57	0.60
Transmembrane Helix	58	78	0.92
Cytoplasmic	79	98	0.84
Transmembrane Helix	99	121	0.83
Non-Cytoplasmic	122	125	0.70
Transmembrane Helix	126	146	0.91
Cytoplasmic	147	153	0.87
Transmembrane Helix	154	173	0.96
Non-Cytoplasmic	174	180	0.88
Transmembrane Helix	181	202	0.92
Cytoplasmic	203	221	0.96
Transmembrane Helix	222	243	0.91
Non-Cytoplasmic	244	249	0.78
Transmembrane Helix	250	270	0.95
Cytoplasmic	271	290	0.90
Transmembrane Helix	291	309	0.96
Non-Cytoplasmic	310	318	0.84

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDASFNAST ARAAHRPDEA GFGDYFALLK PRVMSLVVFT ALVGLVAAPV SVHPFIGFCA  60
   61 ILFIAIGGGA SGALNMWWDA DIDQVMKRTK KRPIPAGKVE PGEALALGLG LSGLSVMMLA 120
  121 LATNVLAGAF LAFTIFFYVV VYTMWLKRTT PQNIVIGGAA GAFPPVIGWI AATGDMSVEP 180
  181 WLMFALTFMW TPPHFWALAL FMRSDYDDAG VPMLTVTHGR RATRVHILIY TILLALLALG 240
  241 TAFSNIGGPI YLAVALVLNA LFLLGAIRIW RRDEADSEAD NFKTERGFFK LSLLYLFLHF 300
  301 GAILAEALLR PYGLGGWG