YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56697881, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQAVAPSPPR PALIFGVAMR HFILRRLAVM LLTAACLTFV VFFLTNLMPN LEKLAKTEAN  60
   61 ARMSDAEVLS WLTERGYTQD IFTKYGEWLG VVPSSRVNGG DGELYTRCAR PERTAEVAPH 120
  121 YCGVLQGEFG FSTVFKEEVS TVIAKRLGTT GYLMLAVLCV MVPLSLLIGV LAGMREGSLA 180
  181 DRLLSTFAII TTSTPEYVSA VLLISFFASK NAGISPVLVE WGMIEGPTLF KASAATAMKG 240
  241 ITFANFTLPV LALTFYGMGY IARMTRASMT EVMTAQYIRT ARLKGASFRA IVLKHALRNA 300
  301 MITPFTVIML QIPWLLTGVV IVETIFNYKG FGWALVQAAG NNDIELLMGI SVVAVIVVLL 360
  361 TQLISDIGYV FLNPRIRVN

Type	Start	End	Confidence
Cytoplasmic	1	21	0.88
Transmembrane Helix	22	45	0.86
Non-Cytoplasmic	46	150	0.88
Transmembrane Helix	151	173	0.92
Cytoplasmic	174	183	0.80
Transmembrane Helix	184	208	0.79
Non-Cytoplasmic	209	239	0.80
Transmembrane Helix	240	260	0.89
Cytoplasmic	261	301	0.89
Transmembrane Helix	302	326	0.82
Non-Cytoplasmic	327	345	0.90
Transmembrane Helix	346	370	0.86
Cytoplasmic	371	379	0.86