YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56679617, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	12	0.91
Transmembrane Helix	13	34	0.89
Cytoplasmic	35	48	0.78
Transmembrane Helix	49	71	0.87
Non-Cytoplasmic	72	124	0.94
Transmembrane Helix	125	148	0.86
Cytoplasmic	149	155	0.83
Transmembrane Helix	156	177	0.92
Non-Cytoplasmic	178	197	0.90
Transmembrane Helix	198	220	0.91
Cytoplasmic	221	228	0.89
Transmembrane Helix	229	250	0.89
Non-Cytoplasmic	251	263	0.76
Transmembrane Helix	264	284	0.84
Cytoplasmic	285	326	0.97
Transmembrane Helix	327	348	0.91
Non-Cytoplasmic	349	367	0.92
Transmembrane Helix	368	390	0.90
Cytoplasmic	391	401	0.91

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTDLTTFELI QQLLLRFLPV WACMAVILAG SITTRRKTGL YGQIFDSPVG IAGFSLVLFW  60
   61 VLTAIFANQI ITHDPYGQFS GMKNAFPGSA IPGAEEDTFP WYLLGGDNLA RDVFSRLVSG 120
  121 SRIVLTVSPV ATVFAFLVGI TLGLPAGYYG GRMDTALTFT ANLIIAFPVI LLFYLLVTPE 180
  181 IRAGGPTISF GAGHVWQASV PNVLAAIIFV FPMIFFCLFW QSRFYVRPML RNVLIAITLG 240
  241 VGVWAYLGTA FDYDPTGIFL IEPGLKNIFA IIAMVGAPAK FRIVRGQVLD IKTRDFVAAA 300
  301 QTRGERSWYI MLWEILPNAR GPLIVDFCLR IGYTAILLGA LGFFGLGLTP ESPDWGTTIN 360
  361 EGRKFLALYA HPALAPALAL MSLVLGLNLL GDTLREESLK D