YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56697793, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTGTVTPDQ DKPRDEDAYE LDRRHVAAIL YAVDTDDRDQ LIELMEPLHA ADIADLLEQI  60
   61 NTFDRARLIR LYDREFDGEI LSELDEGIRE EVVRLLNPDV LAEAVRELDS DDVVDLLEDL 120
  121 EESDHETILD ALEDADRVAV EQALAYPEGS AGRLMQREVV MAPEHWTVGE VIDFMRGSDD 180
  181 LPDQFYHVVL VDPRLHPVGN VTLGRIMSAR REVPLSTLAE ETFQIIPADQ DEEDVAYAFN 240
  241 QYHLISAPVV DAEGRLVGVI TIDDAMIVLD EEHEEDILRL AGVGESSLSD TVMETTRQRL 300
  301 PWLAVNLATA ILASLVISIF ESTIANVVAL AVLMPIVASM GGNAGTQSLT VAVRALATRD 360
  361 LTGSNLGRVL RREVMVGLVN GAVFAVVMGI VGHVWFGLPL LGPVIAAAMV VNLVVAGLAG 420
  421 AGIPVLLEKA GIDPALASGT FVTTVTDVVG FFAFLGLASV FLL

Type	Start	End	Confidence
Cytoplasmic	1	301	0.95
Transmembrane Helix	302	320	0.94
Non-Cytoplasmic	321	330	0.57
Transmembrane Helix	331	353	0.85
Cytoplasmic	354	373	0.91
Transmembrane Helix	374	396	0.92
Non-Cytoplasmic	397	403	0.83
Transmembrane Helix	404	427	0.92
Cytoplasmic	428	435	0.92
Transmembrane Helix	436	458	0.89
Non-Cytoplasmic	459	463	0.68