YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56697733, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	4	0.92
Transmembrane Helix	5	25	0.93
Cytoplasmic	26	32	0.81
Transmembrane Helix	33	55	0.89
Non-Cytoplasmic	56	77	0.86
Transmembrane Helix	78	99	0.93
Cytoplasmic	100	111	0.80
Transmembrane Helix	112	146	0.76
Non-Cytoplasmic	147	162	0.48
Transmembrane Helix	163	190	0.75
Cytoplasmic	191	203	0.46
Transmembrane Helix	204	229	0.82
Non-Cytoplasmic	230	237	0.39
Transmembrane Helix	238	263	0.75
Cytoplasmic	264	274	0.40
Transmembrane Helix	275	297	0.90
Non-Cytoplasmic	298	303	0.35
Transmembrane Helix	304	324	0.92
Cytoplasmic	325	329	0.43
Transmembrane Helix	330	353	0.83
Non-Cytoplasmic	354	368	0.48
Transmembrane Helix	369	393	0.84
Cytoplasmic	394	407	0.44
Transmembrane Helix	408	430	0.90
Non-Cytoplasmic	431	464	0.50
Transmembrane Helix	465	488	0.89
Cytoplasmic	489	515	0.51

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNHWIIAPIV LPALLAPFII MVLRYHLDLQ RIFSVAGTVG LVGIALTLTA QASGGAVQVY  60
   61 ELGNWPAPFG IVLVLDRMSA LFVLLTSLLA LVVVLYAMGS GWDKRGRHFH PLFQFQLMGV 120
  121 CGAFLTGDAF NLFVFFEVLL IASYGLMTHG GGAVRLKAGV QYVTYNLLGS TLFLFALGTL 180
  181 YAVTGTLNMA DLAVRVAELP PEDTALLRVG AVLLLLVFCI KAAVLPLHFW LPASYANAPL 240
  241 PVAALFAIMT KVGAYAILRM YTLVFGPDLA IAEGLAGAWL LPAALVTLAV GAIGILGTRH 300
  301 IARMAAFGAI ASMGTLLIAV SLFTPQATAA ALYYAVHSTL AAALMFLVAD LVMERQGGRI 360
  361 DGMPPMAQSG LIAVLFFIGS IALAGMPPLS GFVGKLLVMD AARDAGEFAA IWAMILISSF 420
  421 ITIVGLARAG SLIFWQSHDE RHNTEPDPEN EDEVIHLPAP EPMPGLTFAA VFGLVAGLAA 480
  481 LTLFAGPLMD YTRAMAAQLY EPQAYIDAVL KGGGK