YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56679465, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDRVMRDDLH IMPPPAPLAM QAQDFSAGFR DALAPPDSPQ RDVAPWRVLA FSPAMAATLA  60
   61 LVWLMGDWFS DSGISVLEAV LLALISFNFF WIAFAASTVL LGMLSLSRQP ARARAGRAEP 120
  121 LKVALLMPVY NEVPWYVLGN ARTMLEELKA RGGQHQYAMF ILSDTRDDAI AAQEQASVEA 180
  181 LRTTLAPDLA LYYRRRVENT DRKVGNIADW VAGWGGAWDA MLVLDADSLM TGRAIARLTD 240
  241 ALARDPGAGL IQSFPQLIGA QSVFARMQQF ANGVYGAAFA EGMARWCGQE GNYWGHNAII 300
  301 RTAAFANCAG LPKLRSLSGR EKLIMSHDFV EAGLLRRAGW SVRFLPRIRG SYEETPPTLI 360
  361 DHVLRDRRWC QGNLQHLNLL NARGFRSVSR FHMFHGAIGY LMSPIWFALL VMWALIGHGQ 420
  421 DGSVLQYFSP DNPLFPQWPE MTEGRHVLII VVMYAMLLLP KLLGVLALPL SGAHYSDFGG 480
  481 AGRFLLSFLS EVVLSILYAP ILMVQQMIAV FRTFLGIQKG WSPQARDGGT YGLGTLVKCH 540
  541 MLETLSGLAL GTGIALGLVS VWLAPIALSL ALAVPLSALS GVSAGTARRL IGMREEFREP 600
  601 AITRSARAYR NELKTLLERG SRIHPAE

Type	Start	End	Confidence
Cytoplasmic	1	45	0.97
Transmembrane Helix	46	66	0.91
Non-Cytoplasmic	67	81	0.83
Transmembrane Helix	82	104	0.89
Cytoplasmic	105	392	0.93
Transmembrane Helix	393	416	0.89
Non-Cytoplasmic	417	445	0.89
Transmembrane Helix	446	468	0.85
Cytoplasmic	469	483	0.69
Transmembrane Helix	484	504	0.84
Non-Cytoplasmic	505	553	0.71
Transmembrane Helix	554	584	0.75
Cytoplasmic	585	627	0.90