YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56679447, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MISAPASGTG KTTVMLGLLR ALAEDGLTVQ PFKSGPDYID PAFHLAAAGR ASFNLDSWAM  60
   61 GERLLGAVAA QAAGADIVVA EGSMGLFDGV AKPGETGHGS SAETALRMGW PVVLVLDVGG 120
  121 QAQSAAATAL GFRMYNPDLP FAGVILNRCA SPRHERLTRL GMERAGLPVL GVLPRRGDLT 180
  181 LPERHLGLIQ AVEHPDLEAA IAGYAAFLRE HVDLGAIRAA ASSSPVGLSS APLPPPPAQR 240
  241 IALARDAAFS FTYPHLLEGW RAGGAEILPF SPLADEAPAP DADLVWLPGG YPELHAGRLA 300
  301 AAETFLSGLR KHAQTRPVHG ECGGYMALGE ALVDKDGSRH RMAGLLGLVT SYEKRKFNLG 360
  361 YRRAELLAPL PGYGTGATLR GHEFHYSSIL EQPDAPLARV FDAEGVEGPQ TGSRRGNVTG 420
  421 TFFHLIAEAG S

Type	Start	End	Confidence
Signal Peptide	1	23	0.80
N-region	1	14
H-region	15	20
C-region	21	23
Cleavage Site	23	24
Non-Cytoplasmic	24	431	0.99