YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56697672, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSFIFKRIG LAAVITVLAV SSLFLIVHMI PGDPVSTMLG PRATPEMRAA LETRMGLDKP  60
   61 LIVQIGLFFA NMLRGDLGMD VFSNRPVTEI VLNQVPFTLT LILFSITWSA VLGIALGCYS 120
  121 AVNRNSLGDR LTGILSVSVI AVPAFVVALY SLLIFAVKLQ WFPAIGAGDA GDWGDQLHHL 180
  181 VLPSLAIGLS WVGYIARLVR ASMLEVMGEG HIRTARAFGL PERRIVFGYA LRLAILPTVT 240
  241 VIGVGMGFLL SAAVFTEIVF SRPGLGKLVI DSITTRNYPV VMGSVLFSTL IFVASTTLAD 300
  301 IVNAILDPRI RAGK

Type	Start	End	Confidence
Cytoplasmic	1	8	0.91
Transmembrane Helix	9	30	0.94
Non-Cytoplasmic	31	98	0.95
Transmembrane Helix	99	122	0.89
Cytoplasmic	123	132	0.88
Transmembrane Helix	133	156	0.92
Non-Cytoplasmic	157	176	0.93
Transmembrane Helix	177	198	0.89
Cytoplasmic	199	232	0.91
Transmembrane Helix	233	255	0.91
Non-Cytoplasmic	256	281	0.91
Transmembrane Helix	282	306	0.83
Cytoplasmic	307	314	0.96