YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56679408, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTDTTMPKPR SELGEILYHL VRDPLGLTGL VIVVLILASA LFAPWIAPYD PIALNVPDRL  60
   61 QGPSGAHLMG TDQLGRDTFS RVIWGGRVAL QVALPTIGGA IFFGLLLGMI AGYGPKWLDN 120
  121 LIVLLFDTIR SFPTVMFALA VVALVGPSLN TVIVVIMVTS IPTYGRVVRT LTQSLKEAEF 180
  181 ITAEKSLGAS TPRIMAVHIL PNVLGPLAVL AAMDIPTVVG LEAGLSFLGM GVKPPTPSWG 240
  241 SLLNDGYNLI RNTPWLIIAG GIPLILTTIG FTFLGEALRD VVDPKLRGKG GK

Type	Start	End	Confidence
Cytoplasmic	1	24	0.66
Transmembrane Helix	25	47	0.89
Non-Cytoplasmic	48	88	0.66
Transmembrane Helix	89	113	0.86
Cytoplasmic	114	122	0.53
Transmembrane Helix	123	146	0.65
Non-Cytoplasmic	147	147	0.33
Transmembrane Helix	148	168	0.67
Cytoplasmic	169	198	0.70
Transmembrane Helix	199	221	0.73
Non-Cytoplasmic	222	254	0.72
Transmembrane Helix	255	275	0.94
Cytoplasmic	276	292	0.78