YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56697657, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.92
Transmembrane Helix	6	25	0.94
Cytoplasmic	26	32	0.86
Transmembrane Helix	33	51	0.94
Non-Cytoplasmic	52	55	0.81
Transmembrane Helix	56	75	0.94
Cytoplasmic	76	85	0.85
Transmembrane Helix	86	107	0.91
Non-Cytoplasmic	108	144	0.92
Transmembrane Helix	145	167	0.88
Cytoplasmic	168	178	0.83
Transmembrane Helix	179	199	0.91
Non-Cytoplasmic	200	203	0.76
Transmembrane Helix	204	223	0.89
Cytoplasmic	224	231	0.63
Transmembrane Helix	232	250	0.81
Non-Cytoplasmic	251	255	0.63
Transmembrane Helix	256	276	0.88
Cytoplasmic	277	477	0.68

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEFGFTTAAY VVAAVLFILS LGGLSGQESA KRAVWYGIAG MALAVFATLI GPGSGLWLLS  60
   61 LILIAAGGII GTYVAKRVQM TEMPQLVAAM HSLVGLAAVF VGFNAHFELG NVLSMTEEAR 120
  121 HGLEGFAALL AHKSPVEQNI LRVELFLGIF IGAVTFTGSV VAYGKLAGKV TSAATKLPGG 180
  181 HMLNAGAAAL SLICLIWYFN SGGFLPLLIM TLAAFFIGYH LIMGIGGADM PVVVSMLNSY 240
  241 SGWAAAAIGF SLGNDLLIVV GALVGSSGAI LSYIMCKAMN RSFISVILGG FGGTTGPAME 300
  301 VEGEQIAIDA EGVAAALNDA DSVVIIPGYG MAVAQAQQSV SELTRKLRAK GKNVRFAIHP 360
  361 VAGRLPGHMN VLLAEAKVPY DIVLEMDEIN EDFPDTDVAI VIGSNDIVNP AAQEDPNSPI 420
  421 AGMPVLECWK AKQVFVSKRG QGTGYSGIEN PLFYKENTRM FYGDAKQSLD KLLPMID