YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56679391, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTPGSAMTEL SQPQPTNPPR SQWLDVWDQF RQHRGAMMGA TLFFLIVAAV YLGPYLWDLD  60
   61 PTKTAIRERN QGPSLAHPFG TDQLGRDLLA RMMAGGATSV SVGITAMLLS LFLGSFVGVL 120
  121 AGFFRKLDGP LMRLTDLFLA LPLLPLLLVM MLLFREPLNA AFGLERGIFI LIVSAIGITS 180
  181 WMPTARIVRG DVLALKEREF VLAARSIGTT NTRLITRHIL PNVLSPIMVS ATLGIATAII 240
  241 TESALSFLGL GFPPDFPTWG RLLFDGVDYL QQFPERVIWP GLAISLTVLS VNYLGDGLRD 300
  301 ALDPRIRGR

Type	Start	End	Confidence
Cytoplasmic	1	34	0.96
Transmembrane Helix	35	55	0.89
Non-Cytoplasmic	56	101	0.93
Transmembrane Helix	102	124	0.92
Cytoplasmic	125	133	0.90
Transmembrane Helix	134	154	0.93
Non-Cytoplasmic	155	166	0.71
Transmembrane Helix	167	185	0.91
Cytoplasmic	186	222	0.93
Transmembrane Helix	223	249	0.79
Non-Cytoplasmic	250	276	0.93
Transmembrane Helix	277	295	0.92
Cytoplasmic	296	309	0.85