YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56697653, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.63
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLTFTIRRLV LAVPTLLFIS LVIFLLLELA PGDPMAQVPL TVPPEVKEKM REALGLGQPM  60
   61 HIRFWKWIVQ FFWIEPQVLI DHYFGTAFSE GKLRVISWQT RSPVMDIVVQ RIPQTLWVVG 120
  121 TAYLVAIIIA LPIGIYSAYR QYSWFDQLGT FVSMVGFSVP PFFSGVLVIV IFSVQLGWFP 180
  181 SIYDTTHVVN SWDSFVYQLK QMIMPVMVLA LQITAQLSRF MRASMLDNLN QDYVRTARAK 240
  241 GLSEYVVVMV HVLRNSMIPV VTVIALGIPS IFGGAIITEQ VFKVNGIGQL LIGALQANDL 300
  301 PMVQTLTFIF AVLIVLFNLI ADVLYGILDP RIRYD

Type	Start	End	Confidence
Cytoplasmic	1	8	0.59
Transmembrane Helix	9	30	0.58
Non-Cytoplasmic	31	115	0.94
Transmembrane Helix	116	139	0.88
Cytoplasmic	140	150	0.82
Transmembrane Helix	151	174	0.88
Non-Cytoplasmic	175	196	0.84
Transmembrane Helix	197	216	0.86
Cytoplasmic	217	257	0.90
Transmembrane Helix	258	278	0.90
Non-Cytoplasmic	279	304	0.89
Transmembrane Helix	305	328	0.87
Cytoplasmic	329	335	0.96