YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56679380, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	12	0.62
Transmembrane Helix	13	34	0.86
Cytoplasmic	35	38	0.58
Transmembrane Helix	39	60	0.75
Non-Cytoplasmic	61	64	0.49
Transmembrane Helix	65	87	0.85
Cytoplasmic	88	94	0.59
Transmembrane Helix	95	113	0.85
Non-Cytoplasmic	114	146	0.79
Transmembrane Helix	147	168	0.87
Cytoplasmic	169	193	0.78
Transmembrane Helix	194	216	0.86
Non-Cytoplasmic	217	222	0.58
Transmembrane Helix	223	243	0.78
Cytoplasmic	244	249	0.55
Transmembrane Helix	250	267	0.69
Non-Cytoplasmic	268	276	0.61
Transmembrane Helix	277	299	0.85
Cytoplasmic	300	314	0.76

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMDLLNILMS ESFWAASLRI ATPLIFGVLG ALICERAGVL NLGIEGIFVV GAMCGWMAVW  60
   61 LGAGLWGGVL VAALAGAFFG LLHAILTVPL GLSQHVSGLG ITLFATSVSY FTYRTALPNV 120
  121 SSPPRIEPFQ PLDLPILSDL PFLGPVLFQQ TALTWLAIAM VGLVWYVLNR TALGVAIQAV 180
  181 GDNPDSVDAQ GLSVYGLRIG AIVAGSALMA LGGAFLTMSA FDAFFFGMVN GRGWVCIALV 240
  241 IFASWRPGKA LLGALLFGAF DALQVRLQTE MGALVPGQVF LMAPYILSII ALVIAARSAD 300
  301 YPRALLQPWF KGQR