YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56697642, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	15	0.96
Transmembrane Helix	16	39	0.88
Non-Cytoplasmic	40	61	0.82
Transmembrane Helix	62	80	0.88
Cytoplasmic	81	90	0.69
Transmembrane Helix	91	108	0.93
Non-Cytoplasmic	109	114	0.71
Transmembrane Helix	115	137	0.91
Cytoplasmic	138	145	0.89
Transmembrane Helix	146	164	0.95
Non-Cytoplasmic	165	196	0.91
Transmembrane Helix	197	216	0.94
Cytoplasmic	217	243	0.85
Transmembrane Helix	244	265	0.88
Non-Cytoplasmic	266	283	0.79
Transmembrane Helix	284	309	0.89
Cytoplasmic	310	322	0.75
Transmembrane Helix	323	343	0.94
Non-Cytoplasmic	344	357	0.83

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIRIEPRANR SRAMDLGIPV LSAVIALAFA AIPLLAAGAN PITAYGEMVK GVFGSVFAVS  60
   61 EMLTRATPLI FTGLAAALAF RAKLWNIGAE GQLYLGAMAA VAVGAGWLDL PGLLLVPLIV 120
  121 ILGASAGAAG MAVPTYLKSR FGADEVVTTL LLNFIILIFL QMMLEGPLKD PMGLGWPQSA 180
  181 PILDQGMLPP LMERMRVHSG LILALVLAGV AQFMLARSVW GFRLRAVGEN AAAARHAGIN 240
  241 VKRSLFGVAI ISGGLAGLAG VSEVAGLKGY LTADLSPGFG YTGIVVAMLA GLSPVGVVIA 300
  301 ALFIASVFVG ADSMSRAMGV SSFLADLVVS MSLLCVLVGG FIARYRIIRS GTGRAAS