YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56679319, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.66
Transmembrane Helix	8	28	0.93
Cytoplasmic	29	35	0.70
Transmembrane Helix	36	54	0.72
Non-Cytoplasmic	55	66	0.79
Transmembrane Helix	67	89	0.90
Cytoplasmic	90	96	0.90
Transmembrane Helix	97	116	0.96
Non-Cytoplasmic	117	128	0.78
Transmembrane Helix	129	150	0.89
Cytoplasmic	151	166	0.94
Transmembrane Helix	167	190	0.86
Non-Cytoplasmic	191	198	0.81
Transmembrane Helix	199	220	0.92
Cytoplasmic	221	227	0.93
Transmembrane Helix	228	249	0.94
Non-Cytoplasmic	250	256	0.78
Transmembrane Helix	257	278	0.85
Cytoplasmic	279	285	0.79
Transmembrane Helix	286	307	0.92
Non-Cytoplasmic	308	310	0.72

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFQALIDVVL PVFLVIGAGY CTTFAGYFKP EHIDGVMRFT QGFAIPCLLF RAIANLDLNA  60
   61 GFDPALLASF YMAAFLCFTA GLLGARLLFN RDWEDSVAIG FCCLFSNSVL LGLAITERAY 120
  121 GPENLVGNYA IIAIHSPFCY ALGITTMEVI RNRGRGGRKM VTSVLNAMFR NVLILGIALG 180
  181 FIVNLSGISL PQIADDALSL IIRAALPGAL FALGGVLVQY RPEGDTRVIV YICAISLLLH 240
  241 PGLVWLFGSA LALPQDLFRS GVLNAAMAPG FNAYIFANIY GRAKRVAASS VLVATAASIL 300
  301 TVWMWLMLLG