YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56697542, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVGAALRNTD MNAVARHIHP GWAIIAPLLV LVVALYLGPI LNIMWLSVTD PEPGLGNYRM  60
   61 LYESDSLLRI VWTTLRICVI TTVFSVTLGY SIAYAMVHCH QRQKNYMLTL LLVSFWISIL 120
  121 VRTFSWLMLL GRSGLINNTL ETLGLVSAPI AFMRNELGVL IGMVHYMIPY AVLPLLVSMQ 180
  181 SLDSRVMDAS RNLGASGSQT FWRIYLPLTL PGIVASTLLV FILSLGFYVT PAVLGGGKVL 240
  241 MVAEYISVQL LVTLKWGTAA MLAALMLAGV LAMLWIMSRF MKLSAVFGGS TR

Type	Start	End	Confidence
Cytoplasmic	1	20	0.90
Transmembrane Helix	21	40	0.95
Non-Cytoplasmic	41	71	0.86
Transmembrane Helix	72	94	0.89
Cytoplasmic	95	105	0.81
Transmembrane Helix	106	126	0.92
Non-Cytoplasmic	127	158	0.84
Transmembrane Helix	159	182	0.81
Cytoplasmic	183	203	0.89
Transmembrane Helix	204	227	0.87
Non-Cytoplasmic	228	255	0.82
Transmembrane Helix	256	277	0.92
Cytoplasmic	278	292	0.88