YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56697541, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRPGLFSLFN RAGAWVLLLF LVTPALIAIP VSLTPKRFLS MPSDELSLRH FQNLFTSEEW  60
   61 LSSFFQSGVI ALSTSVLATF LGTLCAIGLW RVSSKYSELV RAFLLLPLII PQIISAMAFY 120
  121 RLWIPLGLLD SYPGLILAHT ILAAPMVLIT VSASLATFDP RLEQASKNLG ASNWTTMRRV 180
  181 ILPSIRPGVF AGALFAFILS WDEIVVTLFI SKFSVYTLPR RMWNGIRENT DPTVAAAAVV 240
  241 LIAITIIAFV VSAILSRRNA GQSRS

Type	Start	End	Confidence
Cytoplasmic	1	11	0.90
Transmembrane Helix	12	33	0.90
Non-Cytoplasmic	34	68	0.94
Transmembrane Helix	69	90	0.94
Cytoplasmic	91	101	0.81
Transmembrane Helix	102	124	0.89
Non-Cytoplasmic	125	134	0.94
Transmembrane Helix	135	158	0.91
Cytoplasmic	159	181	0.91
Transmembrane Helix	182	201	0.87
Non-Cytoplasmic	202	232	0.88
Transmembrane Helix	233	255	0.95
Cytoplasmic	256	265	0.93