YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56697515, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTGPAENSTN FPGHRLKSPL PLRLATLSLL ILYPVAWFAP LMRAGLLPIF GLSEISVITG  60
   61 LQSLWASDVA LALIVTAFAL FAPYLKTIGT ALIQWNLLDP RAQPALHILG KLAMADIFLI 120
  121 ALYITLAKGI SYATIEAAWG LYLFTACILA SIALGLLTER QIRKATR

Type	Start	End	Confidence
Cytoplasmic	1	19	0.96
Transmembrane Helix	20	41	0.86
Non-Cytoplasmic	42	63	0.82
Transmembrane Helix	64	88	0.82
Cytoplasmic	89	106	0.88
Transmembrane Helix	107	127	0.93
Non-Cytoplasmic	128	137	0.76
Transmembrane Helix	138	158	0.95
Cytoplasmic	159	167	0.96