YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56679245, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.37
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPHLSRRRGA PISGPLMLDA FSEFFRQLAE DYPRWNFVFF YQPVQAGKIW TGLQYTVILS  60
   61 LACLVFSVII GVVGAWLQGS KRRLLRNLVQ GYIQLFRNTP PFVQLLFFYF ALGQLTPTYS 120
  121 PDGWLEVPII SNVGWAIISL SFFAGAFNVE IFRSGIEAVP DATIEASEAL GMTRLQTYSH 180
  181 VILPLAFRVS LPALNNNLVN LIKTTTQAFA IAVPELLYQA VTIWNDYPSA QYPAMLLLFV 240
  241 VYIGLVGIMV LGMNRWERHL AIPGYGN

Type	Start	End	Confidence
Cytoplasmic	1	8	0.66
Transmembrane Helix	9	29	0.58
Non-Cytoplasmic	30	54	0.90
Transmembrane Helix	55	77	0.93
Cytoplasmic	78	94	0.88
Transmembrane Helix	95	116	0.81
Non-Cytoplasmic	117	128	0.77
Transmembrane Helix	129	149	0.87
Cytoplasmic	150	198	0.70
Transmembrane Helix	199	213	0.37
Non-Cytoplasmic	214	231	0.66
Transmembrane Helix	232	253	0.92
Cytoplasmic	254	267	0.84