YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56697502, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGDFDLSVII DNLPFLWQGL QLSLLLTFLA VVGGIVLGTL LALMRLSGIL PLSLLSAGYV  60
   61 NLIRSVPLIL VIFWFYFLVP LALGRPIGGF YSALIAFVMF EAAYYSEIIR AGIQSVRQGQ 120
  121 VHAGQATGLN YWQIQRYVVL PQAFRNMVPI LVTQGIILFQ DTSLVFVVSL RDFMTVSSIV 180
  181 ARTEGRLAEM YVFAALVYFV ICFAGSLFVR RLQKAKTA

Type	Start	End	Confidence
Non-Cytoplasmic	1	20	0.89
Transmembrane Helix	21	43	0.92
Cytoplasmic	44	59	0.70
Transmembrane Helix	60	78	0.92
Non-Cytoplasmic	79	86	0.67
Transmembrane Helix	87	108	0.85
Cytoplasmic	109	149	0.86
Transmembrane Helix	150	170	0.79
Non-Cytoplasmic	171	189	0.80
Transmembrane Helix	190	209	0.95
Cytoplasmic	210	218	0.82