YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56679238, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNYNWNWGVL FEEEYLGWLI SGVGWTFSVA LVAWVLALAV GILVGVGRTL PSRPVALLCT  60
   61 TYVEIFRNVP LLVQLFLWYF VLPEIVPSDM GRWMKRDMPN PEYVTAVVGL GLYTASRVAE 120
  121 QVRAGINAVG GGLTSAAYAN GLSTAQTYRY VLLPISFRLI VPPMTSEFLT IFKNSSLALT 180
  181 IGLLELTAQS QQIAEYTFQG FEAFTAATVI YVVIALCATV IAQILERHTK IPGFVGKA

Type	Start	End	Confidence
Non-Cytoplasmic	1	20	0.74
Transmembrane Helix	21	46	0.87
Cytoplasmic	47	64	0.65
Transmembrane Helix	65	82	0.62
Non-Cytoplasmic	83	125	0.44
Transmembrane Helix	126	142	0.48
Cytoplasmic	143	168	0.44
Transmembrane Helix	169	188	0.51
Non-Cytoplasmic	189	202	0.80
Transmembrane Helix	203	225	0.89
Cytoplasmic	226	238	0.89