YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56679205, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	9	0.76
Transmembrane Helix	10	34	0.90
Non-Cytoplasmic	35	53	0.86
Transmembrane Helix	54	76	0.87
Cytoplasmic	77	86	0.73
Transmembrane Helix	87	108	0.86
Non-Cytoplasmic	109	113	0.58
Transmembrane Helix	114	132	0.82
Cytoplasmic	133	139	0.74
Transmembrane Helix	140	162	0.91
Non-Cytoplasmic	163	171	0.73
Transmembrane Helix	172	195	0.91
Cytoplasmic	196	216	0.79
Transmembrane Helix	217	236	0.94
Non-Cytoplasmic	237	241	0.66
Transmembrane Helix	242	263	0.82
Cytoplasmic	264	303	0.79
Transmembrane Helix	304	325	0.84
Non-Cytoplasmic	326	336	0.68
Transmembrane Helix	337	358	0.91
Cytoplasmic	359	366	0.64
Transmembrane Helix	367	385	0.90
Non-Cytoplasmic	386	399	0.50
Transmembrane Helix	400	420	0.78
Cytoplasmic	421	427	0.58
Transmembrane Helix	428	449	0.90
Non-Cytoplasmic	450	465	0.73

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDVVLLFVMV VGFLLIGVPI AVALGFSSVL FLLIFSDSSL ASVAQTLFQA FEGHFTLLAI  60
   61 PFFILASSFM TTGGVAQRII RFAIACVGHL RGGLAISGVF ACMMFAALSG SSPATVVAIG 120
  121 SIVIAAMKQA GYTKEFAAGV ICNAGTLGIL IPPSIVMVVY AASVEVSVGR MFLAGVIPGI 180
  181 LAGVMLMVAI YVMATIKGMP KGDWAGWGEI GDSFRDALWG LMLIVVIMVG IYGIPGITKA 240
  241 IFTPTEAAAV ASVYAFLVAS FVYRDMGPLA AENNGGVRKS LLTRPLALVG AFFHKDTRNT 300
  301 LFEAGKLTVT LMFVIANALI LKHVLTDEQV PQHVANAMLS AGLGPITFLI VVNVILLIGG 360
  361 QFMEPSGLLV IVAPLVFPIA IELGIDPIHL GIIMVVNMEI GMITPPVGLN LFVTSGVAGM 420
  421 PMMSVVRAAL PFLAVLFVFL ILVTYVPWLS TVLPNALMGP EIIIK