YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56697448, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	19	0.78
Transmembrane Helix	20	40	0.93
Non-Cytoplasmic	41	56	0.79
Transmembrane Helix	57	76	0.92
Cytoplasmic	77	86	0.76
Transmembrane Helix	87	110	0.83
Non-Cytoplasmic	111	114	0.58
Transmembrane Helix	115	133	0.87
Cytoplasmic	134	144	0.83
Transmembrane Helix	145	168	0.90
Non-Cytoplasmic	169	175	0.84
Transmembrane Helix	176	197	0.93
Cytoplasmic	198	221	0.95
Transmembrane Helix	222	243	0.88
Non-Cytoplasmic	244	248	0.72
Transmembrane Helix	249	268	0.89
Cytoplasmic	269	281	0.82
Transmembrane Helix	282	303	0.88
Non-Cytoplasmic	304	320	0.85
Transmembrane Helix	321	342	0.88
Cytoplasmic	343	347	0.78
Transmembrane Helix	348	369	0.86
Non-Cytoplasmic	370	374	0.60
Transmembrane Helix	375	393	0.78
Cytoplasmic	394	405	0.69
Transmembrane Helix	406	431	0.83
Non-Cytoplasmic	432	441	0.80

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSYELIAILM FSTMMVMLMT GQRVFGAIGF VAVLASLLLW GDRGGYDIGF SAAMKLMKWY  60
   61 PLLTLPMFIF MGYVLSESKI ADDLYKMFHV WMGGLNGGLA IGTIGLMVLI SAMNGLSVAG 120
  121 MAIGATIALP ELLKRGYDKK MVTGVIQAGS SLGILVPPSV VLVLYAMIAR QPVGQLWLAG 180
  181 VLPGLMMAAM FILYIAIRCR LNPALGPALS PEERDVPMGE KLRLLRAGLL PLGIFAAMMV 240
  241 PFVNGWTSLV ESSAIGALTA FLAAVFKGRM NRQVFETSVR STLGISCMFM WIILAALAFG 300
  301 AVFDGLGAVK AIEDLFTERL GLNPWVILIL MQLSFIIMGT FLDDTAMLVI VAPLYVPLVG 360
  361 ALGFDLIWYG VLYTITTQIA YMTPPFGYNL FLMRAMAPPE ITLRDIYGSI LPFVLVMTLA 420
  421 LAIIMIFPQI ALWLPETVYN K