YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56697419, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIRSVNTYYY VAARKKLAND LEIHCFSGTG RPQKRGSAGQ DLIACFDFAG GFAYRFAMHR  60
   61 LRSLIRPNYA QKISLLATLP LVLAVAAIAA LVAYQARTLA EREIQALERQ LLQAKKAELR 120
  121 NYVTQARNGF AHIYGPAAPD DAEAKTRVAQ MLAAMIYGQD GFFFVYDYEG KNLVSPRQTE 180
  181 FINRNWEGLT DSKGVPVVDE FIRLARQGAG WHSFMWEKPS TGEEAQMVAY VVGLQDWRWA 240
  241 VGTGVFIDDV LASVAAARAE TQARVRRTFL YIGAIALAAL LIVFGSGMVI NIRERRLADA 300
  301 KLKELTQRVF DAQEEERGRV ARELHDGISQ ILVGVRYALD NARRRLARGD HEGAEPPLDK 360
  361 GIDNLGSAIS EVRRISRDLR PGVLDDLGLG PALKSLTDDF RERTGIATDF TTVVFRNRLD 420
  421 QNSKIALYRI AQEALTNIER HSGATHVSID LRGHKKGATM RISDNGRGIR STPGRPGPGL 480
  481 GLRNMQERIE QLDGNLRILS SRGAQSGTVI EVSLPLSHLL PPQEEPASKR KALP

Type	Start	End	Confidence
Cytoplasmic	1	37	0.75
Transmembrane Helix	38	58	0.61
Non-Cytoplasmic	59	72	0.57
Transmembrane Helix	73	94	0.90
Cytoplasmic	95	267	0.61
Transmembrane Helix	268	290	0.92
Non-Cytoplasmic	291	534	0.68