YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56679094, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.96
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFGTRIIVVG AGIGGLAAAL ALKARGADVT VLEQADAIAE VGAGIQVSPN GAAVLGALGL  60
   61 GPAFEAISVR GRAVVLSDYR RPGEVLRLDL MRHAGDQRYA FVHRADLIDL LAGAVRRAGV 120
  121 NVRLLQKVDR VDPGSPPVLH MCNGAHLTAD LVVGADGLHS RARAALNGAA KPFFTGQIAW 180
  181 RATVPNTVGL PDEARVFMGP GRHLVCYPLR GGSLVNLVAV QERADWTAES WSQSDDPANL 240
  241 RAAFADFTGL PAALLAQVRA PGLWGLFRHP VAETWHRGRV TLVGDAAHPT LPFMAQGANM 300
  301 ALEDAWVLAD ELGKAPGIEL GLAAYQDRRQ ARARRVIAAA NGNAWKYHLR APLRGPAHLA 360
  361 LSLGGRLAPA RMVRQFDWLY RHDVTRGA

Type	Start	End	Confidence
Signal Peptide	1	26	0.89
N-region	1	17
H-region	18	23
C-region	24	26
Cleavage Site	26	27
Non-Cytoplasmic	27	388	0.99