YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56697293, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATYDFLFNS LGLRDWCDAG KTGEATLSMA DLLAKAGGKT ETSLFNLPFP SLDELNRACA  60
   61 AFAKSRDVTK GVEEGFLAAK GVLRFVLDPL TQPLSWMLEF ALATFEATPW WIMMPLLALV 120
  121 VFFASRSMRL VGFVMACLMF LAFVDHYDHA MQTLAIIFVC AFLCVLFGVP IGIAMSRNDR 180
  181 LQRMTIPILD MLQTLPSFVY LIPLIFLFSV TEPKLYGIAI ILYAIVPVIR LTDLGIRLVD 240
  241 RDVIEAADSF GMTDRQKLFG VQIPLALPNI MAGVNQTIMM SLAMVVIASL VSAPGLGVLV 300
  301 LRGIRNLELG VGLVSGLGIV LLAVILDRVT KAALNRVNAA QQH

Type	Start	End	Confidence
Non-Cytoplasmic	1	99	0.61
Transmembrane Helix	100	123	0.69
Cytoplasmic	124	129	0.53
Transmembrane Helix	130	147	0.82
Non-Cytoplasmic	148	153	0.75
Transmembrane Helix	154	174	0.96
Cytoplasmic	175	187	0.83
Transmembrane Helix	188	208	0.89
Non-Cytoplasmic	209	214	0.76
Transmembrane Helix	215	234	0.83
Cytoplasmic	235	277	0.78
Transmembrane Helix	278	301	0.84
Non-Cytoplasmic	302	308	0.60
Transmembrane Helix	309	326	0.96
Cytoplasmic	327	343	0.72