YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56679021, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.59
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRWVFQIWYT KKKLIVETLL ASVLADGIPS LSARLAREPE TAAIERRQGR RITMSLKFIY  60
   61 VAAGAAALAA TTALADPVTL RVQTHYATEH PTGKQLAIWA DDVQTMSGGD ITIEMFYSSS 120
  121 VVATTETFDA AINGILDCDA TGGAYQTGKN PAFQFVGDIM GGYDTPWQQY SWLYFGDGYA 180
  181 AAQELYNAQN MQLIGWAIYG QESLSSSKPI RGFEDLKGWK FRSPPGMETE IFEKLGASPI 240
  241 VMDFTEIFTA LETGIIDGAD ASGLYNNVGL GLYDIVKHAT YPGFHSMPSD HLACNLDVWN 300
  301 GLTDQQRRIV DTAWQKLGFQ IALSNELNNN AAAAKLRAEG VTLHNWSAED RAEFRKAAQA 360
  361 AWDDWGTRSP EAGALLASHK SYLTQLGLLN

Type	Start	End	Confidence
Cytoplasmic	1	55	0.50
Transmembrane Helix	56	75	0.57
Non-Cytoplasmic	76	390	0.99