YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56697283, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVFCASLYL SDIRGAIEEE ANGFFDILSL VTSRAAMIMI AFVVLVMFYE VVSRYVFSRP  60
   61 TLWANELSLW IASFVFLFAG QYAMQQRSHI RIYVIYDIMP RWAQKTSDVV SVLLIVVFTF 120
  121 ALVWGNYADA ERRFLRMETF GTAWDPPIPG IVKPAVLIII VLVALQAISN LIADWHKAPE 180
  181 HHSPLDDIDE TEIEHIRKTL EK

Type	Start	End	Confidence
Cytoplasmic	1	29	0.78
Transmembrane Helix	30	52	0.83
Non-Cytoplasmic	53	66	0.62
Transmembrane Helix	67	85	0.91
Cytoplasmic	86	105	0.78
Transmembrane Helix	106	128	0.88
Non-Cytoplasmic	129	149	0.79
Transmembrane Helix	150	172	0.85
Cytoplasmic	173	202	0.82