YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56679019, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	11	0.74
Transmembrane Helix	12	34	0.79
Non-Cytoplasmic	35	35	0.34
Transmembrane Helix	36	59	0.62
Cytoplasmic	60	76	0.45
Transmembrane Helix	77	100	0.82
Non-Cytoplasmic	101	116	0.54
Transmembrane Helix	117	149	0.79
Cytoplasmic	150	160	0.54
Transmembrane Helix	161	187	0.83
Non-Cytoplasmic	188	194	0.63
Transmembrane Helix	195	217	0.92
Cytoplasmic	218	247	0.70
Transmembrane Helix	248	270	0.87
Non-Cytoplasmic	271	288	0.65
Transmembrane Helix	289	309	0.91
Cytoplasmic	310	318	0.67
Transmembrane Helix	319	341	0.74
Non-Cytoplasmic	342	343	0.52
Transmembrane Helix	344	361	0.88
Cytoplasmic	362	381	0.84
Transmembrane Helix	382	402	0.93
Non-Cytoplasmic	403	410	0.73
Transmembrane Helix	411	435	0.72
Cytoplasmic	436	437	0.50
Transmembrane Helix	438	459	0.78
Non-Cytoplasmic	460	471	0.55
Transmembrane Helix	472	494	0.87
Cytoplasmic	495	511	0.55
Transmembrane Helix	512	535	0.87
Non-Cytoplasmic	536	542	0.55

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEFLELFAWM KVGDVATISI ILLIGMFILL AIGMPLGFAS AFLAVAVIVM KFGPEASFGR  60
   61 FGSGPLSVLA QAVYRQMTNY VLISVPLFIF MAALLERSGI ARDMYSSLNI WLSRTRGGIA 120
  121 IVTSIMAVIM AAMSGIIGGE VVLLGLIALP QMLRLGYNQN LAIGTICASG SLGTMIPPSI 180
  181 VLIFYGLVTE TSIKALFTAS FLPGFMLASF FIIYIIVRTN LNPSLAPLPE PDPDDPPGRV 240
  241 KALLFLAFLA KFATYGALFF VGLLLLISAF SGGTMSDDGV TTMWEVLRVR IAKLLVVAAI 300
  301 GFVVSRLLGK ERTSLGWDMG KGLVAPIVVV GVVLGSIYGG ITGITEAAAM GTIAVFVIGL 360
  361 IRREMTVDVV WDSLMRTLKS TGTIIWVTIG AASLAAAYTL AGGPTFVANL IVTSELPTMG 420
  421 VILVMMVIFL IMGMFMDWVG IVLLIMPVFL PIVLKLPVAE IGFLGELEPR HVAIWFGVVF 480
  481 CMNMQVSFLS PPFGPAAFYL KSVAPPHISL TAIFRGFLPF IMLQLCALAV LLIWPNIVTL 540
  541 FL