YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56697227, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.40
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.82
Transmembrane Helix	21	39	0.80
Non-Cytoplasmic	40	47	0.69
Transmembrane Helix	48	64	0.40
Cytoplasmic	65	70	0.36
Transmembrane Helix	71	92	0.89
Non-Cytoplasmic	93	120	0.48
Transmembrane Helix	121	155	0.72
Cytoplasmic	156	198	0.85
Transmembrane Helix	199	221	0.90
Non-Cytoplasmic	222	241	0.89
Transmembrane Helix	242	261	0.95
Cytoplasmic	262	270	0.80
Transmembrane Helix	271	291	0.91
Non-Cytoplasmic	292	300	0.64
Transmembrane Helix	301	320	0.95
Cytoplasmic	321	360	0.92
Transmembrane Helix	361	382	0.90
Non-Cytoplasmic	383	423	0.95
Transmembrane Helix	424	444	0.95
Cytoplasmic	445	460	0.93
Transmembrane Helix	461	482	0.90
Non-Cytoplasmic	483	487	0.86
Transmembrane Helix	488	508	0.94
Cytoplasmic	509	528	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHDRAVNGQQ TRDIMNTPIK AAALAAPMAM LSAAPVLAQS VDEKVNQIFA NSTGWFVNFI  60
   61 FSPFPGTSFP WIVMWLVIAA TVFTLYFGFI QFRAFPHSIS LVKGDYSDPN DAGEVSHFQA 120
  121 LATALSGTVG LGNIAGVAVA VGIGGPGATF WMILAGLLGM ASKFTECTLG VKYRNEYADG 180
  181 TVSGGPMYYM TKGFKERGLP AGGFMAILFS IFCVLGALGG GNMFQANQAH AQIANVVGDF 240
  241 PGWITGFIFA GIVFAVIVGG LKSIASVTEK VVPFMGVLYV ATALVIILMN ADMIGWAFGQ 300
  301 IFAGAFTGLG IAGGMVGALI QGFKRAAFSN EAGVGSAAIA HSAVRTKEPI TEGFVSLLEP 360
  361 FIDTVVICTM TALVIIITGQ LVSDPNTGLY LLDEGASTIQ TVDGNKGVAL TSAAFSSAFP 420
  421 FFKYILAIAV ILFAFSTMIS WSYYGLKAWT FLFGEGKTKE LTFKIIFCLF VVIGASANLG 480
  481 PVIDFSDAMI FAMAVVNIMA LYLLMPIVKK ELDSYLSRLK SGEIKKFG