YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56697225, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	13	0.57
Transmembrane Helix	14	34	0.59
Non-Cytoplasmic	35	35	0.29
Transmembrane Helix	36	64	0.72
Cytoplasmic	65	71	0.36
Transmembrane Helix	72	93	0.56
Non-Cytoplasmic	94	94	0.42
Transmembrane Helix	95	116	0.84
Cytoplasmic	117	125	0.69
Transmembrane Helix	126	146	0.91
Non-Cytoplasmic	147	166	0.61
Transmembrane Helix	167	192	0.77
Cytoplasmic	193	193	0.36
Transmembrane Helix	194	223	0.71
Non-Cytoplasmic	224	233	0.67
Transmembrane Helix	234	257	0.82
Cytoplasmic	258	269	0.66
Transmembrane Helix	270	291	0.82
Non-Cytoplasmic	292	535	0.72

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQIVGSVALM LWGIRLVRTG FIRAFGGSLR HYLGLAISGR LTSFGVGLAI TVFLQSSTAT  60
   61 ALIISSFASK GLVQTPAALA VMLGADVGTS ISAQILSFNL SWLAYAAILI GFFLHGRGGR 120
  121 FATRQIGRAI VGLGMVLLAL SLIRMSSQPL READGLAYVL SALEGEVLLT LFLMAVLTWL 180
  181 VHSSLAVVLL TASLASAGIV PTGTGLVMIL GANIGGTIPP IIATLSTGPQ SQHAALGNAG 240
  241 FKLLASLLVL PFLPWVGERL QSFGGDAQVL VNFHLTFNLL VATLFLPWVQ TAAALLARVF 300
  301 PDTGAGAVEP VTKYLDKELI TSPALALTSA TRELYRVNER IEDSLALLSG GIAARDQVDV 360
  361 QGAQENRARV AAMLEEFKFY LTDITREEIS ESDSAKAMNL LLIATNLGHV SELVTNAVEL 420
  421 TASTSHEQIR FSEAGTAELL EMLELIHQGI RLALSAALLG DAKVRKTLQK GRKELERMVD 480
  481 ESRQAHFSRL AEGTLSSIST TSLHNELLRD FSRIYYHIYT ASKIGGRDSS VMIRG