YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56697216, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKVSDKLSGV SRRDFFRVAG RFGLSSTVLG LGGLTGAVTL PSLAAAAEST YDKRFKKEAK  60
   61 HTLKFGAAGF NARNLLIERA GCLEFARDLE ERTDGEIRVE FIGDNQICGQ LSCVEKTQNG 120
  121 IVDIYAASTQ NSAGGAPYLN VLDYAYVFPG RASQYHFLYS PESNAILRDP LEKRHGLKFL 180
  181 FSHCELRGLQ MGKSFADKPT VTKLEELFGT KNRVTGTQLG RIAMQLLNLN PVPVAWEETL 240
  241 DGLKTGLIDG AETWASAVAY ANMSPVVSQS VDLRFFCGTE HTSMSAKVFD SLDGYLQDAV 300
  301 MESAYLAQVH VQAANEAALV KTVGFSDPVL PGTLFDEHDV RPAFLAEDQI KMAEEMCSPE 360
  361 YNPEPWAQWR ERLNNWSGGI DTYAELHRVA REVPADMKPE NVEPRRWWKG

Type	Start	End	Confidence
Signal Peptide	1	46	0.86
N-region	1	37
H-region	38	43
C-region	44	46
Cleavage Site	46	47
Non-Cytoplasmic	47	410	0.99