YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56697214, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	7	0.73
Transmembrane Helix	8	33	0.86
Non-Cytoplasmic	34	48	0.65
Transmembrane Helix	49	73	0.76
Cytoplasmic	74	89	0.51
Transmembrane Helix	90	111	0.78
Non-Cytoplasmic	112	112	0.29
Transmembrane Helix	113	127	0.70
Cytoplasmic	128	141	0.70
Transmembrane Helix	142	166	0.84
Non-Cytoplasmic	167	173	0.88
Transmembrane Helix	174	197	0.92
Cytoplasmic	198	216	0.87
Transmembrane Helix	217	236	0.95
Non-Cytoplasmic	237	243	0.87
Transmembrane Helix	244	266	0.93
Cytoplasmic	267	303	0.92
Transmembrane Helix	304	323	0.90
Non-Cytoplasmic	324	338	0.74
Transmembrane Helix	339	359	0.86
Cytoplasmic	360	363	0.52
Transmembrane Helix	364	384	0.68
Non-Cytoplasmic	385	385	0.27
Transmembrane Helix	386	419	0.63
Cytoplasmic	420	427	0.47
Transmembrane Helix	428	450	0.90
Non-Cytoplasmic	451	453	0.59

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTDGNWTILI SVGVTFLFML GVPVFLVIGY WVIGMSLVLG LPLINTGSAL ADVFTDGFAL  60
   61 LAMPLFILTG DLINRSGIAR RLSDFAYACL GWLRGGLAMA SLGACGLFAA ISGSNSATTA 120
  121 TIGSMLHPEM VKGGYDERFS AATAAAGGTV GIIIPPSIIF IVYGFLMNLP ISELFVAGII 180
  181 PGAMMVGGMM LVAFFICSRN KWGHLIRLEL ARVLKTGLGA WLGFFAIGLV LWGIYTGKFS 240
  241 PTEAAGVTVG FCIIVGFVSL PIHALMGRPS EERDFRERGI SEYLVVQGFS PLELPSITMR 300
  301 SAQITGILAP LIAVSVVMQQ ILSVLGAQEI IGDFVRGMGG YYAVLFTSMA IVFFAGMVLE 360
  361 SLPVTIILAP ILAPIAASVG VDPIQFGVIF LVGASIGFIT PPYGLNLYVA SGVTGVPYFR 420
  421 LLRYTVPYLF ALLSVWIMVA LLPALSTILI PSG