YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56678923, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLRTYTRQY AVQDNRLASL SYFGTFAVYF TALYLAITYV GHWYVLIPAG VVFAFAAVRL  60
   61 YVLQHDCGHH SLFETRNQNE IAGHVLSPFT FAPFEVMKQN HNLHHAGVGN LEHRETGEIH 120
  121 TMTLREWQAA GWRQRLVYRL YRNPFILIPL GAAFTYFIRY RWPKNATRFG ARGVVLHNLS 180
  181 IVAFLTLLWA LAGMTGFWVW LGFSFLGGML GVFLVYLQHN FEDTYWDRRP DLDPQLAALQ 240
  241 GSSALDFGWW FDTAVACITL HDIHHFNARI PSYRLRGCHY NLPPEYAPRR IRFAEAVAAL 300
  301 NLKLWDEEAR CLVPFPKRAG RVAVVTG

Type	Start	End	Confidence
Cytoplasmic	1	17	0.93
Transmembrane Helix	18	37	0.93
Non-Cytoplasmic	38	43	0.70
Transmembrane Helix	44	63	0.93
Cytoplasmic	64	139	0.86
Transmembrane Helix	140	160	0.80
Non-Cytoplasmic	161	168	0.66
Transmembrane Helix	169	191	0.85
Cytoplasmic	192	196	0.59
Transmembrane Helix	197	217	0.93
Non-Cytoplasmic	218	246	0.67
Transmembrane Helix	247	266	0.58
Cytoplasmic	267	327	0.87