YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56678757, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.43
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	16	0.77
Transmembrane Helix	17	36	0.94
Non-Cytoplasmic	37	41	0.72
Transmembrane Helix	42	61	0.92
Cytoplasmic	62	68	0.65
Transmembrane Helix	69	90	0.86
Non-Cytoplasmic	91	179	0.74
Transmembrane Helix	180	198	0.50
Cytoplasmic	199	220	0.67
Transmembrane Helix	221	239	0.43
Non-Cytoplasmic	240	257	0.70
Transmembrane Helix	258	283	0.82
Cytoplasmic	284	292	0.71
Transmembrane Helix	293	313	0.85
Non-Cytoplasmic	314	317	0.62
Transmembrane Helix	318	336	0.71
Cytoplasmic	337	339	0.61
Transmembrane Helix	340	361	0.61
Non-Cytoplasmic	362	364	0.53
Transmembrane Helix	365	383	0.91
Cytoplasmic	384	393	0.61
Transmembrane Helix	394	418	0.85
Non-Cytoplasmic	419	431	0.53
Transmembrane Helix	432	457	0.80
Cytoplasmic	458	458	0.43
Transmembrane Helix	459	481	0.66
Non-Cytoplasmic	482	493	0.54
Transmembrane Helix	494	510	0.91
Cytoplasmic	511	676	0.70

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRVLPRIEAA LLAQRGHLFP WVPVFLALGI GFYFLLRVEP GLTHYALAAG FALLVGALAW  60
   61 ARPGAFSPLG WALALIAAGF VLAGARAHQV AAPVIEGRYY GPVEGRVVAL DRSASDKLRV 120
  121 TLDQVRLDRW MPTGPPRHVR ISLHGDERVP EPGSRIMTTA YLSPPQGPVE PGGFDFRRHA 180
  181 WFQGLGAIGY TRVPVLLARP PDRSERDMSV FTLRMAASAH IRARLPGDVG GFAAAVTTGD 240
  241 RSGVSQGALD ALRASNLAHL LAISGLHMGL LAGFVFTALR VALSLIPPLA LRLPVRKLAA 300
  301 LGALAVAAGY LALSGGNVAT QRAFVMVAVM LCAVLVDRRA LSMRAVAMAA LIVLVLRPEA 360
  361 LLGPGFQMSF AATVALVAVF GWLREAEIGL GPRWLNPVAG VVISSAVAGL ATAPIGAAHF 420
  421 NTLAHYGLVA NLMSVPLMGL VVIPAAVLAL VLAPLGLDWI GLEVMGLGLR WILGVADWVA 480
  481 GMDGARGYVM RPDWVVLPIL TLGALWLVLW RGRARLAGVP VMAAAFWLWS GAERPGVLIA 540
  541 DTGGLVGVMT ETGRALSKPR GAGFIAGVWL ENDGDGADQM AAAARWPGED MLRKIRVGEV 600
  601 EIVHVTGKRA AQGLSDCDRA QLIVSAVPLA VNGPCEVYDP KRLALTGALS IGPKGVESAA 660
  661 HLSGRRLWNG AARPVQ