YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56696956, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAESALWAS LPVPAFLIDA DDRIVDVNSA AEGFLNLSRK AVLGHPIWDQ LAIDAPIEPA  60
   61 FERARGQGTP LFVNDIDVGS GNRAPLQCAI QIAPLVGSPG VMMMLVSPRE LAGRMTQSHS 120
  121 VKSAAQSAIG MAEMLAHEIK NPLAGITGAA QLLSMNLAPE DLELTDLIVA ESRRIVKLLE 180
  181 QVEQFGNLSV PDFKPVNIHD VLDRARRSAL LGFGAHMKII EDYDPSLPLA YGDPDQLLQV 240
  241 VLNLLKNASE AAPGGGTIRL RTYFEHSFRL RRNDGSGQSL PLQVEVIDDG PGLPEEIRAD 300
  301 IFDPFVSGRE NGTGLGLALV SKIISDHDGW IAVDSVPGRT VFRLSLPRVP KDRGEKESN

Type	Start	End	Confidence
Signal Peptide	1	20	0.68
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	359	0.99