YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56696950, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	15	0.93
Transmembrane Helix	16	40	0.83
Non-Cytoplasmic	41	47	0.90
Transmembrane Helix	48	68	0.92
Cytoplasmic	69	75	0.88
Transmembrane Helix	76	98	0.90
Non-Cytoplasmic	99	109	0.76
Transmembrane Helix	110	126	0.54
Cytoplasmic	127	142	0.48
Transmembrane Helix	143	165	0.86
Non-Cytoplasmic	166	198	0.55
Transmembrane Helix	199	231	0.75
Cytoplasmic	232	235	0.40
Transmembrane Helix	236	269	0.73
Non-Cytoplasmic	270	286	0.75
Transmembrane Helix	287	308	0.87
Cytoplasmic	309	318	0.80
Transmembrane Helix	319	341	0.79
Non-Cytoplasmic	342	358	0.81
Transmembrane Helix	359	379	0.89
Cytoplasmic	380	418	0.91
Transmembrane Helix	419	442	0.93
Non-Cytoplasmic	443	448	0.81
Transmembrane Helix	449	469	0.82
Cytoplasmic	470	483	0.79
Transmembrane Helix	484	508	0.82
Non-Cytoplasmic	509	511	0.76

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVRRRQTSET GLLRQLPLAL LIWGLFSLMM WVPAVYALTL NDHPTSRSFF YAGILGLVVV  60
   61 TTISLARAGR PSRHGLLGQL AVLLSTFAVL PLFLAVPFHD ALKTTSFLNA YFEMVSAITT 120
  121 TGAEMFPDPG RLSAPLHLWR AQVGWLGGLV MWIAASAILA PLSLGGFEVT AQGQPGRVLV 180
  181 GQGESVDPRG RLLRVAATLA PVYAGLTLVV AILLLAAGDS GLVAICHAMS VMATSGISPV 240
  241 GGLSGGASGL TGEAILFLFM FFALSRLTFS SDTAMRGHAR LDQDPEFRIG LLILLGVPAL 300
  301 LFLRHWSGAI DIASGENLTL ALRALWGSLF TVMSFLSTTG FESTDWAEAR QWSGLGTPGM 360
  361 ILLGLSVIGG GVATTAGGVK LLRVYALYLN GTRELQRLVH PSSVSSATGR NRRIQRGGAF 420
  421 IAWVFFMLFA ISLAAIALAL AAAGSDFETA MVLSIATLST TGPLIEIGAQ EPIRLIEMPA 480
  481 AAKLILSGAM IIGRLETLAF IALITPALWR N