YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56678684, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.68
Transmembrane Helix	6	25	0.71
Cytoplasmic	26	32	0.78
Transmembrane Helix	33	51	0.92
Non-Cytoplasmic	52	55	0.86
Transmembrane Helix	56	76	0.93
Cytoplasmic	77	88	0.72
Transmembrane Helix	89	110	0.88
Non-Cytoplasmic	111	115	0.61
Transmembrane Helix	116	138	0.81
Cytoplasmic	139	154	0.87
Transmembrane Helix	155	176	0.90
Non-Cytoplasmic	177	184	0.74
Transmembrane Helix	185	208	0.84
Cytoplasmic	209	218	0.71
Transmembrane Helix	219	238	0.80
Non-Cytoplasmic	239	241	0.66
Transmembrane Helix	242	259	0.90
Cytoplasmic	260	271	0.81
Transmembrane Helix	272	294	0.89
Non-Cytoplasmic	295	300	0.75
Transmembrane Helix	301	322	0.87
Cytoplasmic	323	329	0.82
Transmembrane Helix	330	352	0.86
Non-Cytoplasmic	353	358	0.84
Transmembrane Helix	359	382	0.91
Cytoplasmic	383	394	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQSYAADLIA LGLLFLTGLA ADQLGARSRL PRVTLLLICG LLAGSAGFDL IPESLAALYP  60
   61 IISVIALSMV AFLLGGELSL RTLSGHGRAI VVISVMVVLV TQLTVSAGLA MIGMPLAAAL 120
  121 MVGALATATD PAATLDVIRQ GRASGDFPRR LKGIVAIDDA WGVLLFGLVA VLAGAVEGNG 180
  181 SAHGLLGGAL VEIAGSVALG LAVGLPGASL TGRLSGGEPL RIEALGLVFL TAGLSLWLDL 240
  241 SYLIAGMTAG AVIVNLAHHH KRAFREIEHI EWPFMIVFFI LAGASLDLSA LWAVGPLLMG 300
  301 YVALRVLGRV LGGWAGAALA ATARGERPWY GPALLPQAGV AIGMALIAGD LFPQYADMIT 360
  361 ALAIGATVVF ELAGPLAAAY ALRRVRDSRD QSAA