YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56696881, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.45
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIGGFAQCRQ VFTRGNPMSI ETREARQPWI LLSPALTAIM LLLFVPLSFI VVYSFWLRTA  60
   61 TGADQVGFYL DNWAEALSDR FYRDILFSTL RIAAITTAVC ALMGYPAAYF IARSKGNKAI 120
  121 LLLLLMLPFW ISYIIRTMSW INILGVSGAF NSVLISLGVI SEPIQMLYNE TTVILGLVHF 180
  181 LLPFMVLNIY VSLDGIDTNL EAAANSLGAT KWQSFLQVTL PLSLPGLAAG GLLCFVLGAG 240
  241 TYITPLVLGG PRDAMFANLV FEAIITQLNW PLGSALSLML LAVLGALVMI YNRYLGMAQL 300
  301 MKGLG

Type	Start	End	Confidence
Cytoplasmic	1	28	0.93
Transmembrane Helix	29	53	0.86
Non-Cytoplasmic	54	89	0.85
Transmembrane Helix	90	111	0.90
Cytoplasmic	112	118	0.76
Transmembrane Helix	119	135	0.89
Non-Cytoplasmic	136	140	0.53
Transmembrane Helix	141	161	0.76
Cytoplasmic	162	170	0.55
Transmembrane Helix	171	193	0.83
Non-Cytoplasmic	194	221	0.62
Transmembrane Helix	222	248	0.80
Cytoplasmic	249	267	0.47
Transmembrane Helix	268	291	0.85
Non-Cytoplasmic	292	305	0.45