YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56696880, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGWHLIRAWS IGVYIFMFLP VAVVVLLSFN ASQFGSFPMT GFSLRWFLEL WNNEAILRAF  60
   61 RTSLVLGLMT ALISTTLGVL ASLALVRYKV PGANLISTLL IAPILVPEVV LAVALLLFLN 120
  121 FLGVNKSFGL LLFGHVIFTL PFVILVVQAR LVSIKRDIEE AAMSLGATPI QTFFQITLPL 180
  181 MMPAVLAGGL FAFTISFDDI TGTLFWKPGG VETVPTQIFA MLRNSISPEI NALGTVMIVM 240
  241 TVGLPLLGAA IARQLARKRG T

Type	Start	End	Confidence
Cytoplasmic	1	10	0.89
Transmembrane Helix	11	32	0.92
Non-Cytoplasmic	33	63	0.88
Transmembrane Helix	64	86	0.89
Cytoplasmic	87	95	0.85
Transmembrane Helix	96	119	0.89
Non-Cytoplasmic	120	130	0.76
Transmembrane Helix	131	152	0.93
Cytoplasmic	153	172	0.92
Transmembrane Helix	173	195	0.93
Non-Cytoplasmic	196	229	0.95
Transmembrane Helix	230	252	0.90
Cytoplasmic	253	261	0.89