YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56678558, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.99
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFVKLSASA LAIAAVSATA AAARDQVQVA GSSTVLPYAS IVAEAFGENF DFPTPVVESG  60
   61 GSSAGLKRFC EGVGENTIDV ANASRKIKDK EVAVCAENGV TDIIEVRIGY DGIVFASDIA 120
  121 GNTFEFTPSD WFLALSDKIM VDGQLVDNPN STWADVNAAF PAQPIQAFIP GTKHGTREVF 180
  181 EDKVILAGCE ATGAFEALKA ANGDDKKAAE KACIALRTDG VSVDIDGDYT ETLARIESNK 240
  241 DGIGVFGLAF YENNTDKLQV ATMSGIVPST ESIATGEYPV SRPLYFYVKK AHIGVIPGLK 300
  301 EYAEFFIADE IAGPDGPLAE YGLVSDPELA KTQEAVADEK VIGGNS

Type	Start	End	Confidence
Signal Peptide	1	22	0.98
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	346	0.99