YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56696814, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESGQKKPQR FVFVLLDQFT MLCFACAVEA LRIANRMAGQ QLYEWSVVGE GGASATCSNG  60
   61 TVFKLDGDLE ELRREDVVLV CGGIDVQKAT TKKVVGWLRR EARRGPVIGG LCTAGYTLAK 120
  121 AGLLDGKRAT IHWENQDSFV EEFEEVTLTK SVFVIDGARI TTAGGTASID LMLKLIANTH 180
  181 GEELANAVAD QLIYSSIRTD QDTQRLSTPT RIGVRHPKLS QVIQMMERNI EEPISPALLA 240
  241 KDVGMSTRQL ERLFRRYLSR SPKRYYMELR LQKARNLLMQ TDMSVINVAL ACGFASPSHF 300
  301 SKCYRAHYNT TPYRERGAQS TRLSV

Type	Start	End	Confidence
Signal Peptide	1	30	0.59
N-region	1	21
H-region	22	27
C-region	28	30
Cleavage Site	30	31
Non-Cytoplasmic	31	325	0.96