YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56678542, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.42
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRVVITGAG TINALGHSVP ETLTAMREGK CGIGELEFRD VDRLAIRIGG QVRGFEAEGR  60
   61 FNRQQMSLYD RFTQFTLTAA KEAIDQAGLA FHGELAAKSG VVLGTAGGGV STWDENYRSV 120
  121 YEEGKNRVHP FVVPKLMNNA AASHVSMEHN LKGPSFTVST ACASSNHAMA QAFSMVRSGM 180
  181 APVMITGGSE SMLCFGGVKA WEGLRVMSKD ACRPFSANRN GMVQGEGAGI FVFEEYEHAK 240
  241 ARGAEILCEV AGFAMSSDAA DIVMPSKQGA ARAMAGALAD ARINPGEVGY INAHGTGTAA 300
  301 NDKTECAAVA DVFGRHADSL MISSTKSMHG HLIGGTGAVE LLACIMALRD WVIAPTIGYE 360
  361 EPDPECALDV VPNEAREAKV DVALSNAFAF GGLNAVLALR KV

Type	Start	End	Confidence
Signal Peptide	1	16	0.55
N-region	1	7
H-region	8	13
C-region	14	16
Cleavage Site	16	17
Non-Cytoplasmic	17	402	0.89